PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G170300.1.p
Common NameGLYMA_17G170300, LOC100792442
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 533aa    MW: 58862.6 Da    PI: 6.5132
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G170300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17176225155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.17G170300.1.p 176 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 225
                          78*******************......55************************997 PP

2AP243.76.8e-14268318155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Glyma.17G170300.1.p 268 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 318
                          89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-9176225IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-15176234IPR016177DNA-binding domain
PROSITE profilePS5103217.596177233IPR001471AP2/ERF domain
SMARTSM003802.0E-31177239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-17177233IPR001471AP2/ERF domain
CDDcd000182.12E-11177234No hitNo description
PfamPF008471.5E-9268318IPR001471AP2/ERF domain
CDDcd000182.76E-25268328No hitNo description
SuperFamilySSF541716.34E-17268328IPR016177DNA-binding domain
PROSITE profilePS5103215.461269326IPR001471AP2/ERF domain
SMARTSM003803.6E-31269332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-16269326IPR001471AP2/ERF domain
PRINTSPR003675.2E-6270281IPR001471AP2/ERF domain
PRINTSPR003675.2E-6308328IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MWDLNDSPDQ RINKDEGSEE GCSSLKTSID GDDMINNNKG KRVGSVSNSS SSAVVIEDGS  60
EEEVDEEEEE EEDDEEGGVG RSMKKRSSKI FGFSVTQDEE SMDSDHPPVT RQFFPVEDAD  120
VAVATGGGTG GSSTFPRAHW VGVKFCQSET LGAGKSSVEV SQPMKKSRRG PRSRSSQYRG  180
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFNIEDYEDD  240
LKQMSNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD  300
TEIEAARAYD KAAIKCNGKE AVTNFDPSIY NNELNTAEST GNAPDHNLDL SLGNATSKPG  360
NNQALGNHAT NAVTHDQHLP SESNWRNGGN KPKLVNILPK PCNRSNNKDS HGRDVHGESE  420
TLRMLSQTHL HSPASNEMQL RYGPYKSHGG ESQMLQNFAH IHPPNFHFPS SSIGGRIGSD  480
LSLSMTDQQQ WQTGPSHYLA TAAASSSFQQ QIRPSSQGWL QKNGFHILMR PS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.446540.0hypocotyl| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8574020.0EU857402.1 Glycine max apetal2-like protein (AP2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600938.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-135AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLI1MVV00.0I1MVV0_SOYBN; Uncharacterized protein
STRINGGLYMA17G18640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-123AP2 family protein